The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1670
Genome IDAE000666
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothermobacter thermautotrophicus str. Delta H [AE000666]
Start position on genome 1577232
End posion on genome 1577304
Amino Acid Thr
Anticodon GGT
Upstream region at tRNA start position 
tgttatgatt
tRNA gene sequence 
GCCTTAGTGGCTCAGGTGGTAGAGCGATGCCTTGGTAAGGCATAGGTCGGGGGTTCGAAT
CCCCCCTAAGGCTttt
Downstream region at tRNA end position 
ctactgattt
Secondary structure (Cloverleaf model)
>At1670	Thr	GGT
                   t      Tttt ctactgattt
                     G - C
                     C - G
                     C - G
                     T - A
                     T - A
                     A - T
                     G - C          T A
                    T     C C C C C     A
      G G A        G      | | | | |     G
    T       C T C G       G G G G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     AGGTC
                    A - T
                    T - A
                    G - C
                    C - G
                    C - G
                  T       A
                  T       A
                    G G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCTTAGTGGCTCAGGTGGTAGAGCGATGCCTTGGTAAGGCATAGGTCGGGGGTTCGAAT
CCCCCCTAAGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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