The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1681
Genome IDAE000666
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanothermobacter thermautotrophicus str. Delta H [AE000666]
Start position on genome 1160496
End posion on genome 1160424
Amino Acid Asn
Anticodon GTT
Upstream region at tRNA start position 
cttggcaggt
tRNA gene sequence 
GCCGCCGTAGCTCAGTAGGTAGAGCGTTCGGCTGTTAACCGATTGGTCACAGGTTCGAGC
CCTGTCGGCGGCGtca
Downstream region at tRNA end position 
tgggcccata
Secondary structure (Cloverleaf model)
>At1681	Asn	GTT
                   t      Gtca tgggcccata
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          C G
                    T     T G T C C     A
      T G A        A      | | | | |     G
    A       C T C G       A C A G G     C
    G       | | | |                 T T
    G       G A G C
      T A          G     TGGTC
                    T   T
                    T - A
                    C - G
                    G - C
                    G - C
                  C       A
                  T       A
                    G T T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTCAGTAGGTAGAGCGTTCGGCTGTTAACCGATTGGTCACAGGTTCGAGC
CCTGTCGGCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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