The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1693
Genome IDCR936257
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNatronomonas pharaonis DSM 2160 Gabara [CR936257]
Start position on genome 1009155
End posion on genome 1009239
Amino Acid Leu
Anticodon GAG
Upstream region at tRNA start position 
gatacgacgt
tRNA gene sequence 
GCGTGGGTAGCCAAGCTAGGCCAACGGCGCAGCGTTGAGGGCGCTGTCCTGTAGAGGTCC
GCCGGTTCAAATCCGGTCCCACGCActg
Downstream region at tRNA end position 
ctggcggccc
Secondary structure (Cloverleaf model)
>At1693	Leu	GAG
                   t      Actg ctggcggccc
                     G - C
                     C - G
                     G - C
                     T - A
                     G - C
                     G - C
                     G - C          T A
                    T     T G G C C     A
    T C G A        A      + | | | |     A
  A         A C C G       G C C G G     C
  G           | | |                 T T
  G         C G G C
    C C A A        G     TCCTGTAGAGGTCC
                    C - G
                    A - T
                    G - C
                    C - G
                    G - C
                  T       G
                  T       G
                    G A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGTGGGTAGCCAAGCTAGGCCAACGGCGCAGCGTTGAGGGCGCTGTCCTGTAGAGGTCC
GCCGGTTCAAATCCGGTCCCACGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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