The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1722
Genome IDCR936257
Search identical group
Phylum/ClassEuryarchaeota
SpeciesNatronomonas pharaonis DSM 2160 Gabara [CR936257]
Start position on genome 1599658
End posion on genome 1599584
Amino Acid Val
Anticodon GAC
Upstream region at tRNA start position 
gagcacgcga
tRNA gene sequence 
GGGTTCGTGGTCTAGGCTGGTTATGACACCTCCTTGACATGGAGGAGGCCGGCAGTTCAA
ATCTGCCCGAACCCAtac
Downstream region at tRNA end position 
cactttaaag
Secondary structure (Cloverleaf model)
>At1722	Val	GAC
                   a      Atac cactttaaag
                     G - C
                     G - C
                     G - C
                     T - A
                     T - A
                     C - G
                     G - C          T A
                    T     C C G T C     A
    C G G A        G      | | | | |     A
  T         T C T G       G G C A G     C
  G           | | |                 T T
  G         T G A C
    T T A          A     AGGCC
                    C - G
                    C - G
                    T - A
                    C - G
                    C - G
                  T       T
                  T       A
                    G A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGTTCGTGGTCTAGGCTGGTTATGACACCTCCTTGACATGGAGGAGGCCGGCAGTTCAA
ATCTGCCCGAACCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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