The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1742
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 861295
End posion on genome 861379
Amino Acid Leu
Anticodon GAG
Upstream region at tRNA start position 
acaggtatga
tRNA gene sequence 
GCAGAGGTTGCCGAGACTGGACAAAGGCGCTAGATTGAGGGTCTAGTTCCGTAGGGATCC
GCGGGTTCAAATCCCGTCCTCTGCAtaa
Downstream region at tRNA end position 
atataaaagt
Secondary structure (Cloverleaf model)
>At1742	Leu	GAG
                   a      Ataa atataaaagt
                     G - C
                     C - G
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     T G C C C     A
    C A G A        T      + | | | |     A
  T         G C C G       G C G G G     C
  G           | | |                 T T
  G         A G G C
    A C A A        G     TTCCGTAGGGATCC
                    C - G
                    T - A
                    A - T
                    G - C
                    A - T
                  T       G
                  T       G
                    G A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAGAGGTTGCCGAGACTGGACAAAGGCGCTAGATTGAGGGTCTAGTTCCGTAGGGATCC
GCGGGTTCAAATCCCGTCCTCTGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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