The detailed information of tRNA gene sequence
[Important Notice]
tRNA genes in Archaeal genomes were obtained from
"SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology,
"6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution,
"25, 2709-2716, 2008".
Sequence ID | >At1757 |
Genome ID | AE017261 |
Phylum/Class | Unclassified |
Species | Picrophilus oshimae DSM 9789 DSM 9790 [AE017261] |
Start position on genome
|
531405
|
End posion on genome
|
531334
|
Amino Acid
|
Ala
|
Anticodon
|
TGC
|
Upstream region at tRNA start position
|
tatggtaaaa
|
tRNA gene sequence
|
GGGCCGATAGATCAGCGGTAGATCGCCTGCTTTGCAAGCAGGAGGGCTCGGGTTCAAATC CCGATCGGTCCAttt
|
Downstream region at tRNA end position
|
aaatatttac
|
Secondary structure (Cloverleaf model) | >At1757 Ala TGC
a Attt aaatatttac
G - C
G - C
G + T
C - G
C - G
G - C
A - T T A
T A G C C C A
G A A | | | | | A
C C T A G T C G G G C
G | | | | T T
G G A T C
T A G AGGGC
C - G
C - G
T - A
G - C
C - G
T A
T A
T G C
|
tRNA gene sequence including intron sequence (Lowercase is intron sequence.) | GGGCCGATAGATCAGCGGTAGATCGCCTGCTTTGCAAGCAGGAGGGCTCGGGTTCAAATC CCGATCGGTCCA |
Intron | |
Final decision | ¡û |
Comments | The tRNA gene was obtained from SPLITSdb. |
Genome/Seq. Info. | [Ensembl] |
SPLITSdb | [SPLITSdb] |
Comment |
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Input Comment |
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