The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1757
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 531405
End posion on genome 531334
Amino Acid Ala
Anticodon TGC
Upstream region at tRNA start position 
tatggtaaaa
tRNA gene sequence 
GGGCCGATAGATCAGCGGTAGATCGCCTGCTTTGCAAGCAGGAGGGCTCGGGTTCAAATC
CCGATCGGTCCAttt
Downstream region at tRNA end position 
aaatatttac
Secondary structure (Cloverleaf model)
>At1757	Ala	TGC
                   a      Attt aaatatttac
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     A - T          T A
                    T     A G C C C     A
        G A        A      | | | | |     A
      C     C T A G       T C G G G     C
      G     | | | |                 T T
      G     G A T C
        T A        G     AGGGC
                    C - G
                    C - G
                    T - A
                    G - C
                    C - G
                  T       A
                  T       A
                    T G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGATAGATCAGCGGTAGATCGCCTGCTTTGCAAGCAGGAGGGCTCGGGTTCAAATC
CCGATCGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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