The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1758
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 618384
End posion on genome 618313
Amino Acid Ala
Anticodon CGC
Upstream region at tRNA start position 
agataacata
tRNA gene sequence 
GGGCCGGTAGATCAGCGGTAGATCGCCTGCTTCGCAAGCAGGAGGGCTCGGGTTCAAATC
CCGACCGGTCCAttt
Downstream region at tRNA end position 
aaactattaa
Secondary structure (Cloverleaf model)
>At1758	Ala	CGC
                   a      Attt aaactattaa
                     G - C
                     G - C
                     G + T
                     C - G
                     C - G
                     G - C
                     G - C          T A
                    T     A G C C C     A
        G A        A      | | | | |     A
      C     C T A G       T C G G G     C
      G     | | | |                 T T
      G     G A T C
        T A        G     AGGGC
                    C - G
                    C - G
                    T - A
                    G - C
                    C - G
                  T       A
                  T       A
                    C G C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCGGTAGATCAGCGGTAGATCGCCTGCTTCGCAAGCAGGAGGGCTCGGGTTCAAATC
CCGACCGGTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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