The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1768
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 851721
End posion on genome 851650
Amino Acid Val
Anticodon GAC
Upstream region at tRNA start position 
taggtggtaa
tRNA gene sequence 
GGGCTCGTAGTCTAGTGGTATGATGTCTCCCTGACACGGAGGAGGTCACCGGTTCGAATC
CGGTCGGGCCCAttc
Downstream region at tRNA end position 
aaaattataa
Secondary structure (Cloverleaf model)
>At1768	Val	GAC
                   a      Attc aaaattataa
                     G - C
                     G - C
                     G - C
                     C - G
                     T + G
                     C - G
                     G - C          T A
                    T     T G G C C     A
        G A        A      | | | | |     G
      T     T C T G       A C C G G     C
      G       | | +                 T T
      G     T G A T
        T A        G     AGGTC
                    T + G
                    C - G
                    T - A
                    C - G
                    C - G
                  C       C
                  T       A
                    G A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCTCGTAGTCTAGTGGTATGATGTCTCCCTGACACGGAGGAGGTCACCGGTTCGAATC
CGGTCGGGCCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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