The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1778
Genome IDAE017261
Search identical group
Phylum/ClassUnclassified
SpeciesPicrophilus oshimae DSM 9789 DSM 9790 [AE017261]
Start position on genome 1443023
End posion on genome 1442939
Amino Acid Leu
Anticodon CAG
Upstream region at tRNA start position 
aacatcaagg
tRNA gene sequence 
GCGGAGATTGCCGAGCCAGGACAAAGGCGATGGATTCAGGGTCCATTTCCGCAGGGATTC
GGGGGTTCAAATCCCCCTCTCCGCAttt
Downstream region at tRNA end position 
taatttattt
Secondary structure (Cloverleaf model)
>At1778	Leu	CAG
                   g      Attt taatttattt
                     G - C
                     C - G
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     C C C C C     A
    C C G A        T      | | | | |     A
  A         G C C G       G G G G G     C
  G           | | |                 T T
  G         A G G C
    A C A A        G     TTCCGCAGGGATTC
                    A - T
                    T - A
                    G - C
                    G - C
                    A - T
                  T       G
                  T       G
                    C A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGAGATTGCCGAGCCAGGACAAAGGCGATGGATTCAGGGTCCATTTCCGCAGGGATTC
GGGGGTTCAAATCCCCCTCTCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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