The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1851
Genome IDAE009950
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus furiosus DSM 3638 [AE009950]
Start position on genome 361464
End posion on genome 361387
Amino Acid Gly
Anticodon GCC
Upstream region at tRNA start position 
aacgacctgt
tRNA gene sequence 
GCGGTGGTAGTCTAGCCTGGTCTAGGACGCCACCCTGCCAAGGTGGAGACCCGGGTTCAA
ATCCCGGCCACCGCACCA
Downstream region at tRNA end position 
caatctttct
Secondary structure (Cloverleaf model)
>At1851	Gly	GCC
                   t      ACCA caatctttct
                     G - C
                     C - G
                     G - C
                     G - C
                     T - A
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        A      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | |                 T T
  G         G G A C
    T C T A        G     AGAC
                    C - G
                    C - G
                    A - T
                    C - G
                    C - G
                  C       A
                  T       A
                    G C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGTGGTAGTCTAGCCTGGTCTAGGACGCCACCCTGCCAAGGTGGAGACCCGGGTTCAA
ATCCCGGCCACCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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