The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1859
Genome IDAE009950
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus furiosus DSM 3638 [AE009950]
Start position on genome 1397193
End posion on genome 1397119
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
cttttgtaat
tRNA gene sequence 
GCCGGGATAGCCTAGAGGCCAGGCGGGGGACTGCAGATCCCCTTTACCCGGGTTCAAATC
CCGGTCCCGGCTCCA
Downstream region at tRNA end position 
caatattttt
Secondary structure (Cloverleaf model)
>At1859	Cys	GCA
                   t      TCCA caatattttt
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     A - T          T A
                    T     G G C C C     A
        G A        A      | | | | |     A
      A     T C C G       C C G G G     C
      G     | | | |                 T T
      G     A G G C
        C C        G     TTTAC
                    G - C
                    G - C
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGATAGCCTAGAGGCCAGGCGGGGGACTGCAGATCCCCTTTACCCGGGTTCAAATC
CCGGTCCCGGCTCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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