The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1869
Genome IDAE009950
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus furiosus DSM 3638 [AE009950]
Start position on genome 1557852
End posion on genome 1557775
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
taacatttgc
tRNA gene sequence 
GCCCGGGTGGTGTAGCCCGGCCTATCATGCGGGACTGTCACTCCCGCGACCCGGGTTCAA
ATCCCGGCCCGGGCGCCA
Downstream region at tRNA end position 
aaattcttct
Secondary structure (Cloverleaf model)
>At1869	Asp	GTC
                   c      GCCA aaattcttct
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        G      | | | | |     A
  C         T G T G       C C G G G     C
  G           | | +                 T T
  G         T C A T
    C C T A        G     CGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    A - T
                  C       C
                  T       A
                    G T C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCCGGGTGGTGTAGCCCGGCCTATCATGCGGGACTGTCACTCCCGCGACCCGGGTTCAA
ATCCCGGCCCGGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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