The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1908
Genome IDBA000001
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus horikoshii OT3 [BA000001]
Start position on genome 1380581
End posion on genome 1380504
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
gggctccagc
tRNA gene sequence 
GGGGCCGTAGGGTAGCTTGGCCCATCCTGCGGGCTTTGGGAGCCCGTGACCCGGGTTCAA
ATCCCGGCGGCCCCACCA
Downstream region at tRNA end position 
attttgtgta
Secondary structure (Cloverleaf model)
>At1908	Pro	TGG
                   c      ACCA attttgtgta
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    T C G A        A      | | | | |     A
  T         T G G G       C C G G G     C
  G           | | +                 T T
  G         T C C T
    C C C A        G     TGAC
                    C - G
                    G - C
                    G - C
                    G - C
                    C - G
                  T       A
                  T       G
                    T G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTAGGGTAGCTTGGCCCATCCTGCGGGCTTTGGGAGCCCGTGACCCGGGTTCAA
ATCCCGGCGGCCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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