The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1910
Genome IDBA000001
Search identical group
Phylum/ClassEuryarchaeota
SpeciesPyrococcus horikoshii OT3 [BA000001]
Start position on genome 1446523
End posion on genome 1446447
Amino Acid Pro
Anticodon GGG
Upstream region at tRNA start position 
ctgtttaagt
tRNA gene sequence 
GGGGCCGTGGGGTAGCTTGGCTATCCTCCCGGCCTGGGGCGCCGGAGACCCGGGTTCAAA
TCCCGGCGGCCCCACCA
Downstream region at tRNA end position 
aaatacttga
Secondary structure (Cloverleaf model)
>At1910	Pro	GGG
                   t      ACCA aaatacttga
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    T C G A        G      | | | | |     A
  T         T G G G       C C G G G     C
  G           | | +                 T T
  G         T C C T
    C T A          C     AGAC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       C
                  T       G
                    G G G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGCCGTGGGGTAGCTTGGCTATCCTCCCGGCCTGGGGCGCCGGAGACCCGGGTTCAAA
TCCCGGCGGCCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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