The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1920
Genome IDAP006878
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus kodakarensis KOD1 [AP006878]
Start position on genome 424241
End posion on genome 424318
Amino Acid Val
Anticodon GAC
Upstream region at tRNA start position 
tccttgggtt
tRNA gene sequence 
GGGCCCGTGGTCTAGACTGGTTATGACGCCACCCTGACAAGGTGGAGGTCCGGGGTTCGA
ATCCCCGCGGGCCCACCA
Downstream region at tRNA end position 
caacagccct
Secondary structure (Cloverleaf model)
>At1920	Val	GAC
                   t      ACCA caacagccct
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
    C A G A        G      | | | | |     G
  T         T C T G       C G G G G     C
  G           | | |                 T T
  G         T G A C
    T T A          G     AGGTC
                    C - G
                    C - G
                    A - T
                    C - G
                    C - G
                  C       A
                  T       A
                    G A C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTGGTCTAGACTGGTTATGACGCCACCCTGACAAGGTGGAGGTCCGGGGTTCGA
ATCCCCGCGGGCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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