The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1942
Genome IDAP006878
Search identical group
Phylum/ClassEuryarchaeota
SpeciesThermococcus kodakarensis KOD1 [AP006878]
Start position on genome 262163
End posion on genome 262077
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
tcatttatgc
tRNA gene sequence 
GCCGGGGTAGCCTAGCCTGGGAAGGCGCGGGCCTGGAGAGTCCGTGGGCGTTTGCCCGCC
AGGGTTCAAATCCCTGCCCCGGCGCCA
Downstream region at tRNA end position 
gctcttaacc
Secondary structure (Cloverleaf model)
>At1942	Ser	GGA
                   c      GCCA gctcttaacc
                     G - C
                     C - G
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C          T A
                    T     G T C C C     A
      C G A        A      | | | | |     A
    C       T C C G       C A G G G     C
    T       | | | |                 T T
    G       A G G C
      G G A        G     TGGGCGTTTGCCCGC
                    C - G
                    G - C
                    G - C
                    G + T
                    C - G
                  C       A
                  T       G
                    G G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGGGGTAGCCTAGCCTGGGAAGGCGCGGGCCTGGAGAGTCCGTGGGCGTTTGCCCGCC
AGGGTTCAAATCCCTGCCCCGGCGCCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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