The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1973
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 884378
End posion on genome 884451
Amino Acid Arg
Anticodon TCG
Upstream region at tRNA start position 
attatcctgt
tRNA gene sequence 
GGGCCCGTGAGGTAGTCAGGATATCCCATCGGCCCTCGGAGCCGACAACCCGGGTTCAAA
TCCCGGCGGGCCCGtac
Downstream region at tRNA end position 
tatatatggt
Secondary structure (Cloverleaf model)
>At1973	Arg	TCG
                   t      Gtac tatatatggt
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     G G C C C     A
    C T G A        G      | | | | |     A
  A         T G G A       C C G G G     C
  G           | |                   T T
  G         T C C C
    A T A          A     CAAC
                    T - A
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  C       G
                    T C G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTGAGGTAGTCAGGATATCCCATCGGCCCTCGGAGCCGACAACCCGGGTTCAAA
TCCCGGCGGGCCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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