The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At1987
Genome IDAL139299
Search identical group
Phylum/ClassUnclassified
SpeciesThermoplasma acidophilum [AL139299]
Start position on genome 15112
End posion on genome 15028
Amino Acid Leu
Anticodon GAG
Upstream region at tRNA start position 
atatgggcaa
tRNA gene sequence 
GCGGAGGTTGTCGAGACTGGTCAAAGGCGCCAGATTGAGGGTCTGGTTCCGTAGGGATGC
GAGGGTTCAAATCCCTCCCTCCGCAtac
Downstream region at tRNA end position 
ttccttctaa
Secondary structure (Cloverleaf model)
>At1987	Leu	GAG
                   a      Atac ttccttctaa
                     G - C
                     C - G
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C T C C C     A
    C A G A        T      | | | | |     A
  T         G C T G       G A G G G     C
  G           | + |                 T T
  G         A G G C
    T C A A        G     TTCCGTAGGGATGC
                    C - G
                    C - G
                    A - T
                    G - C
                    A - T
                  T       G
                  T       G
                    G A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGAGGTTGTCGAGACTGGTCAAAGGCGCCAGATTGAGGGTCTGGTTCCGTAGGGATGC
GAGGGTTCAAATCCCTCCCTCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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