The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2058
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 126257
End posion on genome 126328
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
tgctcgatgc
tRNA gene sequence 
GCCAACGTGGCAGAGCGGTCATGCAAACGCCTGCAGAGCGTTTTCAACCCGGTTCGACTC
CGGGCGTTGGCTtta
Downstream region at tRNA end position 
aaaatacttt
Secondary structure (Cloverleaf model)
>At2058	Cys	GCA
                   c      Ttta aaaatacttt
                     G - C
                     C - G
                     C - G
                     A - T
                     A - T
                     C - G
                     G - C          T C
                    T     G G G C C     A
        G A        G      | | | | |     G
      C     G A C G       C C C G G     C
      G       | | |                 T T
      G     A T G C
        T C        A     TTCAA
                    A - T
                    A - T
                    C - G
                    G - C
                    C - G
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCAACGTGGCAGAGCGGTCATGCAAACGCCTGCAGAGCGTTTTCAACCCGGTTCGACTC
CGGGCGTTGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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