The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2083
Genome IDAM114193
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanocella arvoryzae MRE50 [AM114193]
Start position on genome 196194
End posion on genome 196122
Amino Acid Cys
Anticodon GCA
Upstream region at tRNA start position 
tttacaacct
tRNA gene sequence 
GCAGGGATGGCAGAGCGGCTAATGCGGCAGACTGCAGATCTGTTTTGTGGGTGTTCAACT
CACCCTCCCTGCAtta
Downstream region at tRNA end position 
ccagattttt
Secondary structure (Cloverleaf model)
>At2083	Cys	GCA
                   t      Atta ccagattttt
                     G - C
                     C - G
                     A - T
                     G - C
                     G - C
                     G - C
                     A - T          T C
                    T     C C C A C     A
      C G A        G      | | | | |     A
    G       G A C G       G G G T G     C
    G         | | |                 T T
    C       A T G C
      T A          G     TTTGT
                    G + T
                    C - G
                    A - T
                    G - C
                    A - T
                  C       A
                  T       G
                    G C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCAGGGATGGCAGAGCGGCTAATGCGGCAGACTGCAGATCTGTTTTGTGGGTGTTCAACT
CACCCTCCCTGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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