The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2124
Genome IDAE017199
Search identical group
Phylum/ClassNanoarchaeota
SpeciesNanoarchaeum equitans Kin4-M [AE017199]
Start position on genome 476845
End posion on genome 476928
Amino Acid Leu
Anticodon GAG
Upstream region at tRNA start position 
taaagcttat
tRNA gene sequence 
GCGGCCGTGCCCGAGCGGACAAAGGGGCCAGGTTGAGGTCCTGGTGGGGTAGTCCCTGCC
GGGGTTCGAATCCCCGCGGCCGCActa
Downstream region at tRNA end position 
tttgttttct
Secondary structure (Cloverleaf model)
>At2124	Leu	GAG
                   t      Acta tttgttttct
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     G C C C C     A
      C G A        G      | | | | |     G
    G       G C C C       C G G G G     C
    G         | | |                 T T
    A       A G G G
      C A A        G     TGGGGTAGTCCCTGC
                    C - G
                    C - G
                    A - T
                    G - C
                    G - C
                  T       T
                  T       G
                    G A G
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCCGTGCCCGAGCGGACAAAGGGGCCAGGTTGAGGTCCTGGTGGGGTAGTCCCTGCC
GGGGTTCGAATCCCCGCGGCCGCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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