The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2125
Genome IDAE017199
Search identical group
Phylum/ClassNanoarchaeota
SpeciesNanoarchaeum equitans Kin4-M [AE017199]
Start position on genome 486338
End posion on genome 486422
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
tatttagatt
tRNA gene sequence 
GCCGCCGTGCCCGAGCGGCCCAAGGGGGAGGGCTCGAGACCCTCTCCCCGCCAAGGGGGC
GGGGGTTCGAATCCCCCCGGCGGCGtta
Downstream region at tRNA end position 
ttggataaac
Secondary structure (Cloverleaf model)
>At2125	Ser	CGA
                   t      Gtta ttggataaac
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     C C C C C     A
      C G A        G      | | | | |     G
    G       G C C C       G G G G G     C
    G         | | |                 T T
    C       A G G G
      C C A        G     TCCCCGCCAAGGGGGC
                    G - C
                    A - T
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G
                    C G A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTGCCCGAGCGGCCCAAGGGGGAGGGCTCGAGACCCTCTCCCCGCCAAGGGGGC
GGGGGTTCGAATCCCCCCGGCGGCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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