The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2137
Genome IDAE017199
Search identical group
Phylum/ClassNanoarchaeota
SpeciesNanoarchaeum equitans Kin4-M [AE017199]
Start position on genome 246062
End posion on genome 245991
Amino Acid Thr
Anticodon CGT
Upstream region at tRNA start position 
ataagcataa
tRNA gene sequence 
GCCGCCGTAGCTTAGTGGTAGAGCGGCGGCCTCGTAAGCCGCAGGTCGCGGGTTCGAATC
CCGCCGGCGGCTcat
Downstream region at tRNA end position 
atttataaaa
Secondary structure (Cloverleaf model)
>At2137	Thr	CGT
                   a      Tcat atttataaaa
                     G - C
                     C - G
                     C - G
                     G - C
                     C - G
                     C - G
                     G - C          T A
                    T     C G C C C     A
        G A        A      | | | | |     G
      T     T T C G       G C G G G     C
      G     + | | |                 T T
      G     G A G C
        T A        G     AGGTC
                    G - C
                    C - G
                    G - C
                    G - C
                    C - G
                  C       A
                  T       A
                    C G T
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCCGCCGTAGCTTAGTGGTAGAGCGGCGGCCTCGTAAGCCGCAGGTCGCGGGTTCGAATC
CCGCCGGCGGCT
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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