The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2202
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 289795
End posion on genome 289873
Amino Acid Gly
Anticodon GCC
Upstream region at tRNA start position
cctggaggct
tRNA gene sequence
GCGGCGGTCGTCTAGCCTGGACTAGGACGCCGGCCTGCCACGCCGGAGATCCCGGGTTCA
AATCCCGGCCGCCGCACCA
Downstream region at tRNA end position
accctcctct
Secondary structure (Cloverleaf model)
>At2202	Gly	GCC
                   t      ACCA accctcctct
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        C      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | |                 T T
  G         G G A C
    A C T A        G     AGATC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       C
                  T       A
                    G C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCGGTCGTCTAGCCTGGACTAGGACGCCGGCCTGCCACGCCGGAGATCCCGGGTTCA
AATCCCGGCCGCCGCACCA
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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