The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2202
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 289795
End posion on genome 289873
Amino Acid Gly
Anticodon GCC
Upstream region at tRNA start position 
cctggaggct
tRNA gene sequence 
GCGGCGGTCGTCTAGCCTGGACTAGGACGCCGGCCTGCCACGCCGGAGATCCCGGGTTCA
AATCCCGGCCGCCGCACCA
Downstream region at tRNA end position 
accctcctct
Secondary structure (Cloverleaf model)
>At2202	Gly	GCC
                   t      ACCA accctcctct
                     G - C
                     C - G
                     G - C
                     G - C
                     C - G
                     G - C
                     G - C          T A
                    T     G G C C C     A
    C C G A        C      | | | | |     A
  T         T C T G       C C G G G     C
  G         + | | |                 T T
  G         G G A C
    A C T A        G     AGATC
                    C - G
                    C - G
                    G - C
                    G - C
                    C - G
                  C       C
                  T       A
                    G C C
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GCGGCGGTCGTCTAGCCTGGACTAGGACGCCGGCCTGCCACGCCGGAGATCCCGGGTTCA
AATCCCGGCCGCCGCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK