The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2223
Genome IDCP000816
Search identical group
Phylum/ClassThermoproteota
SpeciesIgnicoccus hospitalis KIN4/I [CP000816]
Start position on genome 1229145
End posion on genome 1228998
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position 
gaaatctggt
tRNA gene sequence 
GGGCCCGTAGCTCAGCCAGGCAGAGCGGCGGGCTCCAGACCCGTAGGTCGGGGGTTCAAA
TCCCCCCGGGCCCACCA
Downstream region at tRNA end position 
cacccgcgag
Secondary structure (Cloverleaf model)
>At2223	Trp	CCA
                   t      ACCA cacccgcgag
                     G - C
                     G - C
                     G - C
                     C - G
                     C - G
                     C - G
                     G - C          T A
                    T     C C C C C     A
      C G A        A      | | | | |     A
    C       C T C G       G G G G G     C
    A       | | | |                 T T
    G       G A G C
      G C A        G     AGGTC
                    G + T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGCCCGTAGCTCAGCCAGGCAGAGCGGCGGGCTCCAGacgaaatctacgggtctggaag
agccgcgaggcgatgatcgcggtctggagcggtgacccgtgtaggagagACCCGTAGGTC
GGGGGTTCAAATCCCCCCGGGCCCACCA
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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