The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2289
Genome IDCP000743
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanococcus aeolicus Nankai-3 [CP000743]
Start position on genome 227156
End posion on genome 227068
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
tctaagtcgt
tRNA gene sequence 
GGCACGGGGTGCTGTATCTGGTGATACAGGGCGGACTTCAGATCCGTCAAGTTCGATTGA
ACTCGGGGTTCGATTCCCCCCCGGTGCCGttt
Downstream region at tRNA end position 
tcgttttatt
Secondary structure (Cloverleaf model)
>At2289	SeC	TCA
                   t      Gttt tcgttttatt
                     G - C
                     G - C
                     C - G
                     A - T
                     C - G
                     G   G
                     G - C
                     G - C          T T
                    G     C C C C C     A
    C T A T        T        | | | |     G
  T         G T C G       C G G G G     C
  G                                 T T
  G         A C A G
    T G A T        G     CAAGTTCGATTGAACT
                    G + T
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       G
                    T C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGCACGGGGTGCTGTATCTGGTGATACAGGGCGGACTTCAGATCCGTCAAGTTCGATTGA
ACTCGGGGTTCGATTCCCCCCCGGTGCCG
Intron
Final decision¡û
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

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