The detailed information of tRNA gene sequence


[Important Notice]
tRNA genes in Archaeal genomes were obtained from "SPLITSdb" (1, 2).
1. Sugahara et al. In Silico Biology, "6, 0039, 2006".
2. Sugahara et al. Molecular Biology and Evolution, "25, 2709-2716, 2008".

Sequence ID>At2291
Genome IDCP000562
Search identical group
Phylum/ClassEuryarchaeota
SpeciesMethanoculleus marisnigri JR1 [CP000562]
Start position on genome 1074898
End posion on genome 1074745
Amino Acid Trp
Anticodon CCA
Upstream region at tRNA start position
agagggcagg
tRNA gene sequence
GGGGTCGTGGCCTAGTCCGGAATGGCGACGGGCTCCAGACCCGTCGATCGTGAGTTCAAA
TCTCACCGACCCCAcat
Downstream region at tRNA end position
tcttgtaact
Secondary structure (Cloverleaf model)
>At2291	Trp	CCA
                   g      Acat tcttgtaact
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     C - G
                     G - C          T A
                    T     C A C T C     A
      T G A        G      | | | | |     A
    C       T C C G       G T G A G     C
    C         | | |                 T T
    G       T G G C
      G A A        G     CGATC
                    A - T
                    C - G
                    G - C
                    G - C
                    G - C
                  C       A
                  T       G *
                    C C A
tRNA gene sequence including intron sequence (Lowercase is intron sequence.)
GGGGTCGTGGCCTAGTCCGGAATGGCGACGGGCTCCAGcggtctttgcacgtgatgaaca
atgggtctcctgacgaacggatgatgacccgttggagcactgatgcatgttcggagagAC
CCGTCGATCGTGAGTTCAAATCTCACCGACCCCA
Intron
Final decision
CommentsThe tRNA gene was obtained from SPLITSdb.
Genome/Seq. Info.[Ensembl]
SPLITSdb[SPLITSdb]

Comment
---
Input Comment
E-mail
Comment
Input this 5 letters

Attention:
When your comment is judged as an irrelevant one by the administrator,
your comment will be deleted by the administrator.

BACK