The detailed information of tRNA gene sequence


Sequence ID>w000320
Genome IDAAIC01000323
Search identical group
Phylum/ClassChlorobiota
SpeciesChlorobium phaeobacteroides BS1 [AAIC]
Start position on genome 1684
End posion on genome 1774
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
tgatcatata
tRNA gene sequence 
cAGAGGGGACGGAACTGGTGTTTCACCTGGTCTTCAAAACCAGTAACAGGTGGATAAAAC
CGGCTGTGGCAGGTTCGATCCCTGCCCCCTCTgcttt
Downstream region at tRNA end position 
tctgatctgt
Secondary structure (Cloverleaf model)
>w000320	SeC	TCA
                   a      cttt tctgatctgt
                     c - g
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C
                     G - C
                     G - C          C T
                    A     C G T C C     A
        T C        C      | | | | |     G
      G     A A G G       G C A G G     C
      G     | | |                   T T
      T     T T C A
        G T        C     TAACAGGTGGATAAAACCGGCTGTG
                    C - G
                    T - A
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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