The detailed information of tRNA gene sequence


Sequence ID>w028068
Genome IDABCS01000030
Search identical group
Phylum/ClassMyxococcota
SpeciesPlesiocystis pacifica SIR-1 [ABCS]
Start position on genome 43825
End posion on genome 43730
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
gggccttcgt
tRNA gene sequence 
GGAAGTGCACGGCCAGCTGGTGCGGCCCCCGGTCTTCAAAACCGGTGTGGGGCGCGTGAG
CGTCCTGGGCAGGTTCGATTCCTGTGCATTTCCGTTt
Downstream region at tRNA end position 
ttctttggtt
Secondary structure (Cloverleaf model)
>w028068	SeC	TCA
                   t      GTTt ttctttggtt
                     G - C
                     G - C
                     A - T
                     A - T
                     G + T
                     T - A
                     G - C
                     C - G          T T
                    A     T G T C C     A
      C G A        C      + | | | |     G
    T       C C G G       G C A G G     C
    G       | | | |                 T T
    G       G G C C
      T G C        C     TGTGGGGCGCGTGAGCGTCCTGG
                    C - G
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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