The detailed information of tRNA gene sequence


Sequence ID>WENV170666947
Genome IDJYMV01042343
Search identical group
Phylum/Class[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
Species
Start position on genome 3725
End posion on genome 3820
Amino Acid SeC
Anticodon TCA
Upstream region at tRNA start position 
cagtattatg
tRNA gene sequence 
GGGAATGATTGCGCGGCTGGTGCCCGCCGCGGTCTTCAAAACCGTTGTCCCGGTGCTGAA
TCGGGAGCTGGGTTCGATTCCCAGGCGTTCCCGCCA
Downstream region at tRNA end position 
tttgaaaaag
Secondary structure (Cloverleaf model)
>WENV170666947	SeC	TCA
                   g      GCCA tttgaaaaag
                     G - C
                     G - C
                     G - C
                     A - T
                     A - T
                     T + G
                     G - C
                     A   G          T T
                    T     G A C C C     A
      C G G        T      | | | | |     G
    T       C G C G       C T G G G     C
    G         | | |                 T T
    G       C C G C
      T G C        C     TGTCCCGGTGCTGAATCGGGAG
                    G + T
                    C - G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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