The detailed information of tRNA gene sequence


Sequence ID>WENV170667007
Genome IDJYMV01042921
Search identical group
Phylum/Class[JYMV] hydrothermal vent metagenome; Hydrothermal plumes at the Eastern Lau Spreading Center, Western Pacific Ocean
Species
Start position on genome 4122
End posion on genome 4038
Amino Acid Ser
Anticodon TGA
Upstream region at tRNA start position 
actgattttt
tRNA gene sequence 
GCAGAGGTCGCTTAGCCTGGTAGAGCGCGGGCCTTGAGAGCCTGTGTGTGCAAGCACGCG
GGGGTTCGAATCCCTCTCTCTGCGCtt
Downstream region at tRNA end position 
gttatttccc
Secondary structure (Cloverleaf model)
>WENV170667007	Ser	TGA
                   t      GCtt gttatttccc
                     G - C
                     C - G
                     A - T
                     G - C
                     A - T
                     G - C
                     G + T          T A
                    T     C T C C C     A
      C G A        C      | + | | |     G
    C       T T C G       G G G G G     C
    T       + | | |                 T T
    G       G A G C
      G T A        G     TGTGTGCAAGCACGC
                    C - G
                    G + T
                    G - C
                    G - C
                    C - G
                  C       A
                  T       G
                    T G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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