The detailed information of tRNA gene sequence


Sequence ID>WENV170668542
Genome IDLAHQ01000064
Search identical group
Phylum/Class[LAHQ] activated sludge metagenome; sample C-2; Sludge from acidogenic chamber (second chamber) of Anaerobic Baffled Reactor over
Species
Start position on genome 1675
End posion on genome 1578
Amino Acid SeC(p)
Anticodon TCA
Upstream region at tRNA start position 
cgaacatcaa
tRNA gene sequence 
GGAAGTGCCAAGGTCACTGGTGGGCCTCCCGGACTTCAAATCCGGTGTGGGGCGCTAAAA
CCGTCCCAGGTGGGTTCGATTCCCATGCACTTCCGCCA
Downstream region at tRNA end position 
taatttttct
Secondary structure (Cloverleaf model)
>WENV170668542	SeC(p)	TCA
                   a      GCCA taatttttct
                     G - C
                     G - C
                     A - T
                     A - T
                     G - C
                     T - A
                     G - C
                     C - G          T T
                    C     T A C C C     A
      C A C        A      + | | | |     G
    T       T G G A       G T G G G     C
    G       + | | |                 T T
    G       G C C T
      T G G        C     TGTGGGGCGCTAAAACCGTCCCAG
                    C - G
                    C - G
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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