The detailed information of tRNA gene sequence


Sequence ID>WENV170671554
Genome IDLAHU01084842
Search identical group
Phylum/Class[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
Species
Start position on genome 345
End posion on genome 248
Amino Acid SeC(p)
Anticodon TCA
Upstream region at tRNA start position 
gtctcggcgc
tRNA gene sequence 
GGAGGCGAATGTGTCCCGGTGGGCGCCCTGGACTTCAAATCCAGTGGGGGGCAGTATAGG
CTGTCTCCGGTGGGTTCGATTCCCACACGCCTCCGCCA
Downstream region at tRNA end position 
ccgacgacct
Secondary structure (Cloverleaf model)
>WENV170671554	SeC(p)	TCA
                   c      GCCA ccgacgacct
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     C - G
                     G - C
                     A   A          T T
                    A     C A C C C     A
      C C C        T      | | | | |     G
    G       T G T G       G T G G G     C
    G       + | + |                 T T
    T       G C G C
      G G          C     TGGGGGGCAGTATAGGCTGTCTCCG
                    C - G
                    T - A
                    G - C
                    G - C
                    A - T
                  C       A
                  T       A
                    T C A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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