The detailed information of tRNA gene sequence


Sequence ID>WENV170674875
Genome IDLCWY01015072
Search identical group
Phylum/Class[LCWY] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
Species
Start position on genome 474
End posion on genome 383
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position
nnnnnntttt
tRNA gene sequence
GGAGAAGTACTCAAGTAGGCTCAAGAGGACGGTTTGCTAAACCGTTAGGTCGCTTATGCG
GCGCGCGGGTTCGAATCCCGCCTTCTCCGCCA
Downstream region at tRNA end position
ttggtcaccg
Secondary structure (Cloverleaf model)
>WENV170674875	Ser	GCT
                   t      GCCA ttggtcaccg
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     A - T
                     G - C          T A
                    T     C G C C C     A
    A T G A        A      | | | | |     G
  G         A C T C       G C G G G     C
  G           | | |                 T T
  C         A G A G
    T C A          G     TAGGTCGCTTATGCGGCGC
                    A - T
                    C - G
                    G - C
                    G - C
                    T - A
                  T       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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