The detailed information of tRNA gene sequence


Sequence ID>WENV170675259
Genome IDLCWZ01021801
Search identical group
Phylum/Class[LCWZ] anaerobic digester metagenome; anaerobic digester run at haloalkaline conditions (pH=10; 2.0M Na+) with Spirulina as substrate
Species
Start position on genome 458
End posion on genome 367
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
gctccattat
tRNA gene sequence 
GGAGAAGTACTCAAGTAGGCTCAAGAGGACGGTTTGCTAAACCGTTAGGTCGCTTATGCG
GCGCGCGGGTTCGAATCCCGCCTTCTCCGCCA
Downstream region at tRNA end position 
tcagctttaa
Secondary structure (Cloverleaf model)
>WENV170675259	Ser	GCT
                   t      GCCA tcagctttaa
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     A - T
                     G - C          T A
                    T     C G C C C     A
    A T G A        A      | | | | |     G
  G         A C T C       G C G G G     C
  G           | | |                 T T
  C         A G A G
    T C A          G     TAGGTCGCTTATGCGGCGC
                    A - T
                    C - G
                    G - C
                    G - C
                    T - A
                  T       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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