The detailed information of tRNA gene sequence


Sequence ID>WENV170684434
Genome IDLFRM01038886
Search identical group
Phylum/Class[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
Species
Start position on genome 1478
End posion on genome 1391
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
gcaagtatgc
tRNA gene sequence 
GGAGAAGTGGCCGAGTGGTCGAAGGCGCACGCCTGGAAAGTGTGTATACGGTAACGTATC
GAGAGTTCGAATCTCTCCTTCTCCGCCA
Downstream region at tRNA end position 
caaaatttta
Secondary structure (Cloverleaf model)
>WENV170684434	Ser	GGA
                   c      GCCA caaaatttta
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     A - T
                     G - C          T A
                    T     C T C T C     A
      T G A        G      | | | | |     G
    G       G C C G       G A G A G     C
    G         | | |                 T T
    T       A G G C
      C G A        G     TATACGGTAACGTATC
                    C - G
                    A - T
                    C - G
                    G + T
                    C - G
                  C       A
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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