The detailed information of tRNA gene sequence


Sequence ID>WENV170685209
Genome IDLFRM01078413
Search identical group
Phylum/Class[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
Species
Start position on genome 5871
End posion on genome 5945
Amino Acid Pro
Anticodon CGG
Upstream region at tRNA start position 
gtatcagtga
tRNA gene sequence 
GGGGTCGTAGGGTAGCCTGGACCATCCTATGGCGTTCGGGACGCTGTAACCTGAGTTCAA
ATCTCAGCGACCCCAttt
Downstream region at tRNA end position 
tattattaaa
Secondary structure (Cloverleaf model)
>WENV170685209	Pro	CGG
                   a      Attt tattattaaa
                     G - C
                     G - C
                     G - C
                     G - C
                     T - A
                     C - G
                     G - C          T A
                    T     G A C T C     A
    C C G A        A      | | | | |     A
  T         T G G G       C T G A G     C
  G           | | +                 T T
  G         T C C T
    A C C A        A     TAAC
                    T + G
                    G + T
                    G - C
                    C - G
                    G - C
                  T       A
                  T       G
                    C G G
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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