The detailed information of tRNA gene sequence


Sequence ID>WENV170685694
Genome IDLFRM01104568
Search identical group
Phylum/Class[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
Species
Start position on genome 2076
End posion on genome 2168
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
tgccttgaaa
tRNA gene sequence 
GGAGAGATGACCGAGTAGGCCGATGGTGCTCGCCTGCTAAGCGAGTGTGGGGGTTATACT
CCACCGAGGGTTCGAATCCCTCTCTCTCCGCCA
Downstream region at tRNA end position 
tatnnnnnnn
Secondary structure (Cloverleaf model)
>WENV170685694	Ser	GCT
                   a      GCCA tatnnnnnnn
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     C T C C C     A
    A T G A        G      | | | | |     G
  G         G C C A       G A G G G     C
  G         + | | |                 T T
  C         T G G T
    C G A          G     TGTGGGGGTTATACTCCACC
                    C - G
                    T - A
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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