The detailed information of tRNA gene sequence


Sequence ID>WENV170685913
Genome IDLFRM01115407
Search identical group
Phylum/Class[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
Species
Start position on genome 880
End posion on genome 788
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
cgatgcacgc
tRNA gene sequence 
GGAGAGGTGGCTGAGTGGTCGAAGGCGCTCGCCTGGAAAGTGAGTGAACGGCTTATCCCC
GTTCCAAGGGTTCAAATCCCTTCCTCTCCGCCA
Downstream region at tRNA end position 
tttttgtatc
Secondary structure (Cloverleaf model)
>WENV170685913	Ser	GGA
                   c      GCCA tttttgtatc
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     T T C C C     A
      T G A        G      | | | | |     A
    G       G T C G       A A G G G     C
    G         + | |                 T T
    T       A G G C
      C G A        G     TGAACGGCTTATCCCCGTTCC
                    C - G
                    T - A
                    C - G
                    G + T
                    C - G
                  C       A
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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