The detailed information of tRNA gene sequence


Sequence ID>WENV170686571
Genome IDLFRM01151790
Search identical group
Phylum/Class[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
Species
Start position on genome 644
End posion on genome 549
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
nnnnnnngtc
tRNA gene sequence 
GGTGAGGTGGCCGAGTTAGGTTGAAGGCGCTCGCCTGCTAAGTGAGTAGGGGGGCACAAA
CTCCCCTCCAGGGTTCGAATCCCTGCCTCACCGCCA
Downstream region at tRNA end position 
tataaaagaa
Secondary structure (Cloverleaf model)
>WENV170686571	Ser	GCT
                   c      GCCA tataaaagaa
                     G - C
                     G - C
                     T - A
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     G T C C C     A
    T T G A        G      | | | | |     G
  A         G C C G       C A G G G     C
  G           | | |                 T T
  G         A G G C
    T T G A        G     TAGGGGGGCACAAACTCCCCTC
                    C - G
                    T - A
                    C - G
                    G + T
                    C - G
                  C       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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