The detailed information of tRNA gene sequence


Sequence ID>WENV170688290
Genome IDLFRM01238028
Search identical group
Phylum/Class[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
Species
Start position on genome 730
End posion on genome 640
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
aattttatat
tRNA gene sequence 
GGAGAGATGTCCGAGTTGGTTTAAGGTGCAGGTCTCGAAAACCTGTGTCGGTTCATCCCG
ACCGTGGGTTCGAATCCCACTCTCTCCGCCA
Downstream region at tRNA end position 
acggggctta
Secondary structure (Cloverleaf model)
>WENV170688290	Ser	CGA
                   t      GCCA acggggctta
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     C A C C C     A
    T T G A        G      | | | | |     G
  G         G C C T       G T G G G     C
  G           | |                   T T
  T         A G G T
    T T A          G     TGTCGGTTCATCCCGACC
                    C - G
                    A - T
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    C G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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