The detailed information of tRNA gene sequence


Sequence ID>WENV170688683
Genome IDLFRM01257391
Search identical group
Phylum/Class[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
Species
Start position on genome 314
End posion on genome 238
Amino Acid Asp
Anticodon GTC
Upstream region at tRNA start position 
taattaaact
tRNA gene sequence 
GGGGACGTGGTGAAGCTGGTTATCATGCCGGTCTGTCACACCGGTGGCCGCGGGTTCGAG
TCCCGTCGTCCCCGCCA
Downstream region at tRNA end position 
tttcatgtaa
Secondary structure (Cloverleaf model)
>WENV170688683	Asp	GTC
                   t      GCCA tttcatgtaa
                     G - C
                     G - C
                     G - C
                     G - C
                     A - T
                     C - G
                     G - C          T G
                    T     T G C C C     A
      C G A        G      + | | | |     G
    T       A G T G       G C G G G     C
    G       | | | +                 T T
    G       T C A T
      T T A        G     TGGCC
                    C - G
                    C - G
                    G - C
                    G - C
                    T - A
                  C       C
                  T       A
                    G T C
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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