The detailed information of tRNA gene sequence


Sequence ID>WENV170689134
Genome IDLFRM01278680
Search identical group
Phylum/Class[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
Species
Start position on genome 266
End posion on genome 356
Amino Acid Ser
Anticodon GGA
Upstream region at tRNA start position 
cgcggcttcc
tRNA gene sequence 
GGAGAGGTGGATGAGCGGTTTAAGTCACACGCCTGGAAAGCGTGCGTGGGTTCATAGCCC
ACCGCGGGTTCGAATCCCGCCCTCTCCGCCA
Downstream region at tRNA end position 
ggacacaaga
Secondary structure (Cloverleaf model)
>WENV170689134	Ser	GGA
                   c      GCCA ggacacaaga
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C G C C C     A
      C G A        G      | | | | |     G
    G       G T A G       G C G G G     C
    G         + | |                 T T
    T       A G T C
      T T A        A     CGTGGGTTCATAGCCCACC
                    C - G
                    A - T
                    C - G
                    G - C
                    C - G
                  C       A
                  T       A
                    G G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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