The detailed information of tRNA gene sequence


Sequence ID>WENV170689417
Genome IDLFRM01293515
Search identical group
Phylum/Class[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
Species
Start position on genome 506
End posion on genome 598
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
cgtaatgacc
tRNA gene sequence 
GGAGAGGTGGCCGAGCGGTCGAAGGCGGTCGACTCGAAATCGACTAGGCGGTGATGAGCC
GTCTCGTGGGTTCAAATCCCACCCTCTCCGCCA
Downstream region at tRNA end position 
tttaaaaata
Secondary structure (Cloverleaf model)
>WENV170689417	Ser	CGA
                   c      GCCA tttaaaaata
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     G - C          T A
                    T     C A C C C     A
      C G A        G      | | | | |     A
    G       G C C G       G T G G G     C
    G         | | |                 T T
    T       A G G C
      C G A        G     TAGGCGGTGATGAGCCGTCTC
                    G - C
                    T - A
                    C - G
                    G - C
                    A - T
                  C       A
                  T       A
                    C G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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