The detailed information of tRNA gene sequence


Sequence ID>WENV170689801
Genome IDLFRM01311955
Search identical group
Phylum/Class[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
Species
Start position on genome 5195
End posion on genome 5118
Amino Acid Pro
Anticodon TGG
Upstream region at tRNA start position 
aattgcgcgt
tRNA gene sequence 
CGGGGCGTAGCGTAGTTTGGTTAGCGCGCCTGCTTTGGGAGCAGGAGGTCGGAGGTTCAA
ATCCTCTCGCCCCGACCA
Downstream region at tRNA end position 
ttttatttgc
Secondary structure (Cloverleaf model)
>WENV170689801	Pro	TGG
                   t      ACCA ttttatttgc
                     C - G
                     G - C
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C          T A
                    T     T C T C C     A
    T T G A        A      + | | | |     A
  T         T G C G       G G A G G     C
  G         + | | |                 T T
  G         G C G C
    T T A          G     AGGTC
                    C - G
                    C - G
                    T - A
                    G - C
                    C - G
                  T       A
                  T       G
                    T G G
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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