The detailed information of tRNA gene sequence


Sequence ID>WENV170690290
Genome IDLFRM01333756
Search identical group
Phylum/Class[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
Species
Start position on genome 122
End posion on genome 212
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
gatgataaac
tRNA gene sequence 
GGAGAAGTACTCAAGTGGCTGAAGAGGACGGTTTGCTAAGCCGTTAGGGTGGGTAACTGC
CGCGAGGGTTCAAATCCCTCCTTCTCCGCCA
Downstream region at tRNA end position 
cgatgaattc
Secondary structure (Cloverleaf model)
>WENV170690290	Ser	GCT
                   c      GCCA cgatgaattc
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     A - T
                     G - C          T A
                    T     C T C C C     A
      T G A        A      | | | | |     A
    G       A C T C       G A G G G     C
    G         | | |                 T T
    C       A G A G
      T G A        G     TAGGGTGGGTAACTGCCGC
                    A - T
                    C - G
                    G - C
                    G - C
                    T + G
                  T       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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