The detailed information of tRNA gene sequence


Sequence ID>WENV170690619
Genome IDLFRM01352535
Search identical group
Phylum/Class[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
Species
Start position on genome 2425
End posion on genome 2520
Amino Acid Ser
Anticodon GCT
Upstream region at tRNA start position 
gctaaaacgc
tRNA gene sequence 
GGAGAGATACCCAAGCTGGCTGAAGGGGACGGTTTGCTAAACCGTTAGTAGGAGTTAAGC
CTCCTAGCGAGGGTTCGAATCCCTCTCTCTCCGCCA
Downstream region at tRNA end position 
gatttattta
Secondary structure (Cloverleaf model)
>WENV170690619	Ser	GCT
                   c      GCCA gatttattta
                     G - C
                     G - C
                     A - T
                     G - C
                     A - T
                     G - C
                     A - T          T A
                    T     C T C C C     A
    T C G A        A      | | | | |     G
  G         A C C C       G A G G G     C
  G           | | |                 T T
  C         A G G G
    T G A          G     TAGTAGGAGTTAAGCCTCCTAGC
                    A - T
                    C - G
                    G - C
                    G - C
                    T - A
                  T       A
                  T       A
                    G C T
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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