The detailed information of tRNA gene sequence


Sequence ID>WENV170690943
Genome IDLFRM01372112
Search identical group
Phylum/Class[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
Species
Start position on genome 219
End posion on genome 293
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
tgaacaaagc
tRNA gene sequence 
GGGCGATTAACTCAGCGGTAGAGTGTCACCTTCACACGGTGGAAGTCGTTGGTTCGAACC
CAATATCGCCCACCA
Downstream region at tRNA end position 
tcgcaaatca
Secondary structure (Cloverleaf model)
>WENV170690943	Val	CAC
                   c      ACCA tcgcaaatca
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     A - T
                     T - A          C A
                    T     T A A C C     A
        G A        A      + | | | |     G
      C     C T C A       G T T G G     C
      G     | | | |                 T T
      G     G A G T
        T A        G     AAGTC
                    T + G
                    C - G
                    A - T
                    C - G
                    C - G
                  T       C
                  T       A
                    C A C
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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