The detailed information of tRNA gene sequence


Sequence ID>WENV170691173
Genome IDLFRM01383311
Search identical group
Phylum/Class[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
Species
Start position on genome 3078
End posion on genome 3168
Amino Acid Ser
Anticodon CGA
Upstream region at tRNA start position 
gcgtaattat
tRNA gene sequence 
GGAGGAGTACCCAAGCGGCTGAAGGGGCTGGTCTCGAAAACCGGTAGGTCGTGCAAACGG
CGCAGGGGTTCAAATCCCCTCTCCTCCGCCA
Downstream region at tRNA end position 
tttttatttt
Secondary structure (Cloverleaf model)
>WENV170691173	Ser	CGA
                   t      GCCA tttttatttt
                     G - C
                     G - C
                     A - T
                     G - C
                     G - C
                     A - T
                     G - C          T A
                    T     T C C C C     A
      C G A        A      | | | | |     A
    G       A C C C       A G G G G     C
    G         | | |                 T T
    C       A G G G
      T G A        G     TAGGTCGTGCAAACGGCGC
                    C - G
                    T + G
                    G - C
                    G - C
                    T - A
                  C       A
                  T       A
                    C G A
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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