The detailed information of tRNA gene sequence


Sequence ID>WENV170691560
Genome IDLFRM01402870
Search identical group
Phylum/Class[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
Species
Start position on genome 2713
End posion on genome 2639
Amino Acid Val
Anticodon CAC
Upstream region at tRNA start position 
nnnacaaagc
tRNA gene sequence 
GGGCGATTAACTCAGCGGTAGAGTGTCACCTTCACACGGTGGAAGTCGTTGGTTCGAACC
CAATATCGCCCACCA
Downstream region at tRNA end position 
agccaataat
Secondary structure (Cloverleaf model)
>WENV170691560	Val	CAC
                   c      ACCA agccaataat
                     G - C
                     G - C
                     G - C
                     C - G
                     G - C
                     A - T
                     T - A          C A
                    T     T A A C C     A
        G A        A      + | | | |     G
      C     C T C A       G T T G G     C
      G     | | | |                 T T
      G     G A G T
        T A        G     AAGTC
                    T + G
                    C - G
                    A - T
                    C - G
                    C - G
                  T       C
                  T       A
                    C A C
Intron
Comment/Decision
Genome/Seq. Info.[ENA]

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